Figure 3a. Cupin 1 and CHS gene counts and gene family expansions and contractions across 22 genomes and subgenomes					
Gene counts plotted in the two bar charts					
Species	Cupin 1 count (OG0000060)	CHS count (OG0000237)			
Arabidopsis thaliana	9	1			
Amaranthus cruentus	4	2			
Amaranthus hypochondriacus	4	2			
Beta patula	6	4			
Beta vulgaris	7	7			
Spinacia tetrandra	6	5			
Spinacia turkestanica	5	5			
Spinacia oleracea	6	5			
Atriplex hortensis	12	7			
Chenopodium quinoa - SubB	8	5			
Chenopodium quinoa - SubA	7	5			
Haloxylon ammodendron	20	3			
Suaeda glauca - SubB	24	5			
Suaeda glauca - SubA	24	6			
Salicornia bigelovii - SubB	15	7			
Salicornia sp. France - SubC	25	10			
Salicornia bigelovii - SubD	10	10			
Salicornia sinus-persica	22	12			
Salicornia brachiata	21	11			
Salicornia sp. France - SubA	23	10			
Salicornia persica ssp. iranica	25	10			
Salicornia europaea (Israel)	22	11			
Gene families expanded and contracted at each internal node (CAFE family-wide p <= 0.05)					
Node	Descendant tips	Number of descendant tips	Gene families expanded	Gene families contracted	Value shown in the figure
<40>	Spinacia turkestanica; Spinacia oleracea; Spinacia tetrandra; Chenopodium quinoa - SubB; Chenopodium quinoa - SubA; Atriplex hortensis; Beta patula; Beta vulgaris; Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC; Salicornia bigelovii - SubB; Suaeda glauca - SubA; Suaeda glauca - SubB; Haloxylon ammodendron; Amaranthus cruentus; Amaranthus hypochondriacus	21	53	161	+53/-161
<38>	Spinacia turkestanica; Spinacia oleracea; Spinacia tetrandra; Chenopodium quinoa - SubB; Chenopodium quinoa - SubA; Atriplex hortensis; Beta patula; Beta vulgaris; Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC; Salicornia bigelovii - SubB; Suaeda glauca - SubA; Suaeda glauca - SubB; Haloxylon ammodendron	19	33	13	+33/-13
<35>	Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC; Salicornia bigelovii - SubB; Suaeda glauca - SubA; Suaeda glauca - SubB; Haloxylon ammodendron	11	46	79	+46/-79
<32>	Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC; Salicornia bigelovii - SubB; Suaeda glauca - SubA; Suaeda glauca - SubB	10	40	66	+40/-66
<28>	Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC; Salicornia bigelovii - SubB	8	46	285	+46/-285
<34>	Spinacia turkestanica; Spinacia oleracea; Spinacia tetrandra; Chenopodium quinoa - SubB; Chenopodium quinoa - SubA; Atriplex hortensis; Beta patula; Beta vulgaris	8	14	20	+14/-20
<20>	Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata; Salicornia sp. France - SubC	7	40	33	+40/-33
<14>	Salicornia bigelovii - SubD; Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata	6	34	19	+34/-19
<30>	Spinacia turkestanica; Spinacia oleracea; Spinacia tetrandra; Chenopodium quinoa - SubB; Chenopodium quinoa - SubA; Atriplex hortensis	6	120	42	+120/-42
<9>	Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA; Salicornia sinus-persica; Salicornia brachiata	5	88	23	+88/-23
<6>	Salicornia persica ssp. iranica; Salicornia europaea (Israel); Salicornia sp. France - SubA	3	20	44	+20/-44
<24>	Spinacia turkestanica; Spinacia oleracea; Spinacia tetrandra	3	205	186	+205/-186
<25>	Chenopodium quinoa - SubB; Chenopodium quinoa - SubA; Atriplex hortensis	3	129	82	+129/-82
<2>	Salicornia persica ssp. iranica; Salicornia europaea (Israel)	2	63	45	+63/-45
<7>	Salicornia sinus-persica; Salicornia brachiata	2	36	68	+36/-68
<16>	Spinacia turkestanica; Spinacia oleracea	2	51	127	+51/-127
<29>	Suaeda glauca - SubA; Suaeda glauca - SubB	2	298	125	+298/-125
<18>	Chenopodium quinoa - SubB; Chenopodium quinoa - SubA	2	61	123	+61/-123
<31>	Beta patula; Beta vulgaris	2	140	271	+140/-271
<39>	Amaranthus cruentus; Amaranthus hypochondriacus	2	150	314	+150/-314
